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Domain

Laboratory

Lab results, specimens, LOINC codes and pathology

810 laboratory terms

microbiology respirationmicro_resp

The patient's respiratory rate recorded in association with a microbiology encounter or infectious disease evaluation, used as a systemic indicator when assessing sepsis criteria, pneumonia severity, or the physiologic burden of an active microbial infection on pulmonary function during clinical management and monitoring.

microbiology resultmicro_rslt

The reported outcome of a microbiology laboratory test, including organism identification, colony counts, antimicrobial susceptibility findings, or culture results. Documents whether pathogens were detected and their clinical significance for infection diagnosis and treatment decisions.

microbiology review systemsmicro_ros

The body systems evaluated during clinical review of microbiology findings, such as respiratory, genitourinary, or gastrointestinal systems. Used to correlate laboratory culture and sensitivity results with patient symptomatology and guide targeted antimicrobial therapy selection.

microbiology revisionmicro_rev

The version or iteration number tracking amendments to a microbiology report, such as updated organism identification, corrected susceptibility panels, or addended culture results. Ensures clinicians reference the most current and accurate laboratory findings when making treatment decisions.

microbiology riskmicro_rsk

The assessed danger level associated with a microbiology finding, including infection transmission risk, pathogen virulence classification, or patient susceptibility factors. Informs infection control protocols, isolation precautions, and public health reporting requirements for identified organisms.

microbiology routemicro_rte

The anatomical pathway or site through which a specimen was collected or infection is transmitted, such as respiratory, bloodstream, wound, or urinary tract. Critical for correlating culture source with clinical presentation and selecting appropriate antimicrobial therapy routes.

microbiology scoremicro_scr

A calculated numeric rating derived from microbiology findings, such as bacterial load quantification, biofilm scores, or composite infection severity indices. Used to standardize assessment of culture results and support clinical decision-making for antimicrobial treatment thresholds.

microbiology sequencemicro_seq

The sequential ordering number assigned to microbiology tests, specimens, or results within a patient encounter or laboratory workflow. Tracks the chronological progression of cultures, serial susceptibility testing, and repeat specimens to monitor treatment response over time.

microbiology service datemicro_svc_dt

The calendar date on which microbiology laboratory services were rendered, including specimen collection, culture processing, or result reporting. Used to establish clinical timelines for infection onset, treatment initiation, and regulatory compliance with laboratory turnaround standards.

microbiology severitymicro_sev

The clinical seriousness classification of a microbiology finding, reflecting pathogen virulence, infection extent, or degree of antimicrobial resistance. Guides escalation decisions such as hospital admission, intensive care placement, or initiation of broad-spectrum antimicrobial coverage.

microbiology sexmicro_sex

The patient's biological sex recorded in association with a microbiology encounter, used to contextualize culture results for sex-specific infections such as urinary tract infections, sexually transmitted infections, or reproductive tract cultures in clinical data analysis.

microbiology sourcemicro_src

The anatomical site or specimen type from which a microbiology sample was collected, such as blood, urine, wound swab, cerebrospinal fluid, or sputum. Essential for interpreting culture results, determining organism clinical relevance, and differentiating true infection from contamination.

microbiology start datemicro_start_dt

The date marking the initiation of microbiology testing or the onset of a documented infection episode. Used to calculate culture turnaround times, track infection duration, and establish clinical timelines for antimicrobial stewardship and epidemiological surveillance reporting.

microbiology start timemicro_start_tm

The precise time at which a microbiology specimen collection or culture processing began. Critical for calculating laboratory turnaround performance, monitoring time-sensitive infections such as sepsis, and ensuring compliance with clinical protocols requiring timely specimen handling.

microbiology statemicro_st

The U.S. state or geographic jurisdiction associated with a microbiology record, used for regional infectious disease surveillance, public health outbreak tracking, and reportable pathogen notification to state health departments as required by regulatory mandates.

microbiology statusmicro_sts

The current processing or result state of a microbiology test, such as pending, preliminary, final, or amended. Indicates where a culture or sensitivity result stands in the laboratory workflow, enabling clinicians to act on preliminary findings while awaiting confirmed results.

microbiology street addressmicro_st_addr

The physical street address associated with a microbiology record, typically referencing the patient's residence or the facility where specimen collection occurred. Used for public health contact tracing, outbreak investigation, and geographic clustering analysis of infectious disease cases.

microbiology strengthmicro_str

The minimum inhibitory concentration or antimicrobial drug concentration recorded in relation to microbiology susceptibility testing. Used to determine effective antibiotic dosing thresholds against identified pathogens and classify organisms as susceptible, intermediate, or resistant per clinical breakpoints.

microbiology subtotalmicro_subtot

A partial aggregate value within a microbiology dataset, such as the count of positive cultures within a specimen category, organism group, or ward-level infection tally. Supports antimicrobial stewardship reports, infection control dashboards, and departmental microbiology utilization summaries.

microbiology system identifiermicro_sys_id

A system-generated unique identifier assigned to a microbiology record within the laboratory information system or clinical data warehouse. Enables accurate cross-referencing of culture orders, specimen tracking, and result linkage across EHR, laboratory, and infection control platforms.

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